Gut Health/Mental health: the evidence is slowly accumulating

No it wasn’t us who thought of this first. It was a piece in that brilliant mag New Scientist which first gave us this jaw-dropping moment. There may be a link between the digestive system-what we eat, how we prepare it and what else lives in it-and mental health. Maybe, just may be the researchers in this frontier field may be on the edge of finding causal mechanisms for some mental disorders. Some at least. We have started to cover this topos (don’t you love that word?)in several blogs since 2022, with growing enthusiasm. In this spirit we present this latest from Nature Briefing A gut feeling about mental health

Preliminary evidence suggests that nurturing the gut microbiota could help to resolve depression and anxiety, whether through faecal transplant, probiotics or diet. Two 2016 studies showed that transferring faecal matter from someone with depression into rodents gave the animals depression-like behaviors. “This is not how we’d thought about mental illness, as something that can be transferred the way you could catch measles,” says psychiatrist Valerie Taylor. Now researchers are working to untangle how the microbiota influence various human illnesses throughout the gut-brain axis — including effects on the immune system, the vagus nerve and the enteric nervous system.Nature Outlook | 12 min read
This editorially independent article is part of Nature Outlook: The human microbiome, a supplement produced with financial support from Yakult.

But we stress several things. Firstly, it’s early days. All too often people get carried away by excitement, and lose their grip on evidence and reason. But LSS staff and readers are above the level of mental level of conspiracy theory enthusiasts! Correlation does not prove causation, we say gentle readers. That said, the earnest and thorough research around things like neural super highways, neurotransmitter production, microbiome and mood and faecal microbiota transplants has excited our curiosity to the utmost. Next time you see one of those poor devils on the street, their life wrecked by mental disorder, think this: is their hope that one day, at least, this may never happen again?

#mental health #gut #microbiome #digestive system #schizophrenia #blood brain barrier

Bacteriophages v Bacteria: this arms race offers opportunities

We’ve always hymned the praises of bacteriophages here (LSS passim): that they will be a vital second option to supplement the next generation of antibiotic drugs. But we have a confession. We didn’t understand them. We didn’t appreciate that they are biological systems (viruses) interacting with other biological systems (bacteria). And as such, will obey all the usual rules of all such systems, such as arms races between predator and prey, Now a new article by Franklin Nobrega for the Conversation puts that right. [1]

Bacteria have evolved some fascinating defence mechanisms to ward off the relentless attacks of their phage enemies. These involve cutting the nuclear material of the viruses: building up strong cell walls and cellular shutdown mechanisms which act a bit like your IT Department does when it detects a global virus attack on your building’s systems. Recently Franklin and his team have investigated an early warning system called KIWA which gives the bacteria advanced notice that an attack is imminent. To which phages have in turn responded by their own mutations, and so it goes on, etc etc.

There’s a lot to encourage us here. Firstly, human knowledge of bacteriophages and their ways is deepening all the time, always a good thing. In fact Franklin is part of the University of Southampton phage collection project which we showcased here a few weeks ago (LSS 1 7 25) More strikingly, as two systems attack each other in an arms race, they leave little gaps, tiny vulnerabilities, which outsiders can exploit. The promise of new drugs and new bioengineering techniques looks very real indeed. Especially, we suggest if information scientists and complexity theorists are brought in to work alongside the biological teams. All in all, a rather good day for those of us interested in the problems of microbial antibiotic resistance. Go boldly, gentle readers, and be of good cheer.

[1]https://theconversation.com/how-ancient-viruses-could-help-fight-antibiotic-resistance-261970?utm_medium=email&utm_campaign=Latest%20from%20The%20Conversation%20

#microbial antibiotic resistance #bacteria #bacteriophage #health #medicine #phage collection project

Faecal Pellets: Watch the good bacteria chase out the bad

Imagine you get bad news: antibiotic resistant bacteria have set up a colony in your intestine. OK here’s some worse: they could escape and invade your blood, kidneys, whatever. In which case you have real problems. This is a very real scenario which that brilliant researcher Dr Blair Merrick of Guys and St Thomas Hospital has sought to address. [1] as reported by James Gallagher of the BBC Why not, he has reasoned, get some good non resistant bacteria to chase out all those bad ones? It is his chosen method which may raise more than one eyebrow among you, gentle readers

According to Dr Merrick, the way to get the good bacteria into his subjects is via pills made of…..well, made of faecal matter, you know,,,poo. To quote James:

Dr Merrick says there are “really promising signals” that poo pills could help tackle the rising scourge of superbugs and that donor bacteria could be going to microbial war with the superbugs as they compete over food and space on the lining of the gut and either rid the body of them completely or “reduce them down to a level that doesn’t cause problems”.

We like this for all sorts of reasons. Firstly the gut really is such a good harbour of antibiotic resistant bacteria. Secondly, as in all things ecological, making its flora more diverse can only be a good thing. Thirdly, we think it has a clever little principle behind it. Antibiotic resistant bacteria have devoted a tiny bit more of their genome to this purpose than non resistant ones. In the world of ecological competition, where tiny differences can make an enormous difference to long term survival, this could be crucial. If done correctly, the good non resistant ones should out compete the bad ones.

It’s early days yet, and the early trials have only been on 41 subjects But as seasoned veterans of the long wars of antibiotics will know, we at LSS welcome every initiative, however unusual it may at first seem. We wish every success to Dr Merrick and his team and hope that their early accomplishments continue in the bigger trials to come,

_{thanks to Ms G lynch}

[1]https://www.bbc.co.uk/news/articles/clyge290l4xo

#gut #microbiome #antibiotic resistant bacteria #health #medicine

Bit of a round up: Yes Men, Fusion, Bowel Cancer, molecular shuttles and seething in the Sahel

Overwhelmed by a huge flood of suggestions , the only way we could cope was to pull them into this handy easy to access guide to some of the most significant happenings of the week. You don’ have to click on all of them

Will the Yes men Bring Down Donald Trump? As organisations get successful they attract more people who are adept at climbing the ladder rather than doing the job. The USA is somewhere near peak Trump at the moment. The Conversation warns how bad advice could end all in tears

https://theconversation.com/trump-surrounds-himself-with-sycophants-its-a-terrible-way-to-run-a-business-and-a-country-257391?utm_medium=email&utm_campaign=Latest%20from

Fusion on Trent The person who sent us this idea has had to endure our enthusiasm for nuclear fusion for more than fifty three years, despite the fact that it hasn’t worked for fifty of them. Now all that may be about to change in Nottinghamshire in the UK as The I newspaper explains https://inews.co.uk/news/politics/limitless-clean-energy-nuclear-fusion-3711971

^{thanks to P Seymour} ^{via Apple News}

Weighing the risks of bowel cancer Inequality leads to poor diets. Poor diets lead to obesity. Obesity leads to bowel cancer. How ironic, therefore, to see a riff on this theme in the Mail, of all places. But there it is so, there you go, as they say(that’s enough cliches-ed)

https://www.dailymail.co.uk/health/article-14756279/Doctors-discover-vital-new-clue-search-cause-mystery-bowel-cancer-explosion-50s.html

Shuttle and open We’ve riffed a bit ourselves here about the blood brain barrier over the years. It’s a pretty tough problem for those who would like to treat various disorders of the central nervous system. Now new hope come sin the form of molecular shuttles as Nature Briefing explains

To reach the brain, drugs must pass through the highly-selective blood-brain barrier. Large molecules, such as antibodies, don’t cross easily, if at all. Now, small chemical tags that can ‘shuttle’ drugs across the barrier are offering a way forward. Several such shuttles, which take advantage of natural transport systems, are in the works. Some have already been trialled in rare diseases, with signs of success. The field is in its infancy, but these shuttles promise to revolutionize treatments for diseases from Alzheimer’s to cancer.Nature | 10 min read

When scientists have a bone to pick It is an invariable law in paleontology , especially of the human kind, that the rancour of the disputes between its protagonists is in inverse proportion to the numbers of remains they have to work with. There is no better example of fear and loathing than the disputes over the bones of Sahelanthropus, the famous Toumai, which was once hailed as the uber-ancestor of us all. Before you hand over the world to an Aristocracy of the Educated, as some advocate, read this.

https://www.theguardian.com/science/2025/may/27/the-curse-of-toumai-ancient-skull-disputed-femur-feud-humanity-origins?CMP=Share_iOSApp_Other

#cancer #bowel #nuclear fusion #dona;d trump #health #medecine #alzheimers #sahelanthopus

Is this plastic eating bacterium the ultimate in antibiotic resistance?

Bacteria that mutate to resist the strongest known antibiotics. At this blog, it’s in our DNA, if you will pardon the flippant quip. But-get this-what if the bacterium in question starts eating the walls you are trying to contain it in? Sounds fantastic, like the plot of one of those old 1950s B movies. Read this piece called Hospital Superbug eats Medical Plastic from the admirable Nature Briefings

Pseudomonas aeruginosa — a strain of bacterium that often causes antibiotic-resistant infections in hospitals — can produce an enzyme that can break down medical-grade plastic. Researchers found that the enzyme, dubbed Pap1, can break down a plastic called polycaprolactone that is commonly used in health care because of its biodegradable properties. The ability to break down plastic could explain why these microbes persist in hospital environments, says biomedical scientist and study co-author Ronan McCarthy.Nature | 4 min read
Reference: Cell Reports paper

We’ve put up the Cell Reports posting for you too here[1]in case the clicker above does not get you through

So is this it? The big one? A wave of highly infectious bacteria that not only eats us humans, but gleefully chomps its way through the very defensive systems we use use to contain it? Possibly, yes. But-let’s keep our Alans on, as they used to say in the old Guy Ritchie movies. For there are two good reasons to do so.

First, it’s only eating one type of plastic, so far. There are lots of others which could be deployed for special medical uses which will be less vulnerable.

Secondly, the fact that this plastic is indeed biodegradable, and that something has found a way to do it, offers great hope. Imagine a plastics ecosystem wherein every bottle, every carton, each piece of wrapping is open to attack by this Pap-1 enzyme. Potentially it opens the way to clean beaches, litter- free hedgerows and unblocked rivers and sewers. There is no reason that the genes to make the enzyme could not be spliced into a safer organism than Pseudomonas aeruginosa. It’s an ill wind that blows no one any good, we say.

[1]https://www.cell.com/cell-reports/fulltext/S2211-1247(25)00421-8

#plastics #antibiotics #microbial antibiotic resistance #science #ecology #pollution

Professor Devi Sridhar: a masterclass in the antibiotics crisis

If antibiotics stop working it will be the end of modern medicine as we know it. That is the essence of this article by the redoubtable Professor Devi Sridhar of Edinburgh University. We’ve channelled her before on this blog (LSS 24 8 24; 26 1023). UK readers will recall her many appearances on TV during the COVID 19 pandemic. Her cool, calm reason was a welcome antidote to the wild hysteria, baseless conspiracy mongering and shameful ignorance of that epoch.

Her article is a reprise of the main points we and other campaigners have been making for years. Over-prescription; lack of research; widespread public ignorance. The tireless Professor Sally Davies is name-checked. Of course: for she has done so much to proclaim this pressing danger. But the real problem for Devi is widespread abuse of antibiotics in farming industries. To produce short term higher yields in livestock such as cattle and pigs. Leading us to eat more meat, which in turn gives us obesity, go on diets that fail, high cholesterol, heart attacks., go on more failed diets…….our fingers fail on the keyboard in sheer despair.

So let’s take one key learning point from Devi’s razor sharp mind, because maybe we haven’t emphasised it enough here down the years. The real problem is that new classes of antibiotics are needed :

Developing similar versions to existing antibiotics isn’t enough because they won’t be as effective against pathogens that have developed resistance: we need totally new classes of drugs. And a recent World Health Organization report noted that since 2017, while 13 new antibiotics have obtained authorisation, only two represent a new chemical class.

Here is the nub of the problem. It wont get any easier, because the best research teams are multinational, and international co-operation is breaking down rapidly. Things like phages and AI may help. Serendipitous searching in nature, in places like gardens or the jaws of Komodo dragons {LSS passim)may could also be marginally helpful. But in the last analysis, disputes about who imports which computer circuit from whom distract attention from the real question. A woman dying from childbirth needs an antibiotic, not a smartphone to photograph it.

[1]https://www.theguardian.com/commentisfree/2025/apr/02/antibiotics-stop-working-prescription-gp-animal-farming

#antibiotic resistance #medicine #science #health #bacteriophage #komodo dragon

Rookwood Operations: Clearing phosphates AND capturing carbon

Today we have a good news story, brought to us by the ineffable Robin McKie of the Guardian, which brings genuine hope, Because it solves two problems for the price of one.[1]

To begin at the beginning. In the last fifteen years or so, England’s rivers have started to fill with huge, choking blooms of algae, which seize all the oxygen from the water, thus killing everything else before, dying back themselves . To leave a poisonous foul-smelling sewer , like the ones you used to find in old towns in the Industrial revolution. The cause? High levels of phosphates on agricultural lands, which runs off into the waterways, producing sudden spurts in the aforementioned algae-and down we go to death, for the ecosystem that is. Now, it could be argued that without high phosphate levels we could not feed our population ( feed or fatten?-ed) So how to square the circle?

The answer is to trap the run-off phosphates and return them to the land. And a small company called Rookwood Operations[2] is doing just that, down in the leafy county of Somerset. Their new Phosphate Removal Material just sits in the water, soaking up the phosphates until it’s full. Whereupon it is returned to the land ready for the farmers to exploit again. And get this:

For every metric ton of PRM produced, carbon is sequestered, locking CO2 for up to 1000 years.
PRM is made from completely natural circular sourced sustainable components

How’s that for two in one? There’s so much to like here for LSS readers. There’s even a feminist angle, as one of the company founders was up for the prestigious UK Women in Innovation Award.

Thinking new. Thinking differently. Using existing technologies to squeeze progress in a new way. Surely that trumps going round smashing your friends over the head because it makes you feel better?

[1]https://www.theguardian.com/science/2025/feb/02/uk-scientist-wins-prize-for-invention-that-could-help-avert-phosphogeddon

[2]https://rookwoodoperations.co.uk

#Rookwood operations #phosphates #river pollution #capture technologies #agriculture #technology

Digital Technologies offer step change in Antibiotic resistance

If something isn’t going too well, you try to look to throw something new into the mix. Something different, from outside the field. We’ve been bashing away with new drugs, education, media ops for ten years now. And still the problem of microbial resistance to antibiotics hasn’t gone away.

Which is why we welcome this new idea covered in The Lancet. The application of advanced digital technologies in things like diagnostics, data collection, clinical decisions -the thousand and one everyday things of medical life-could be a real game changer. So we are rather proud to present these articles from The Lancet. the first [1] by Timothy Rawson and co-workers is a marvellously detailed road map for how it might all work. (Warning-there’s a lot of it, this is going to take more than one coffee break) The second is a general guide from the Lancet about how they will be promoting and covering the whole trope. Well done, them.

We need a game changer, gentle readers. We sincerely hope this is it. Remember- you read it here first. Well, sort of. Anyway, the less you have of us, the more time you will have to read the papers. Off you go!

_{Thanks to G Herbert}

[1]https://www.thelancet.com/journals/landig/article/PIIS2589-7500(24)00198-5/fulltext

[2]https://www.thelancet.com/series/AMR-and-digital-approaches?dgcid=facebook_organic_landigamr24_whod_landig&utm_campaign=landigamr24&utm_content=316076562&

#antibiotics #microbial resistance #digital technologies #the lancet

Round up: Stem Cells, Venezuela, allergies, goodbye to Old King Coal, and the second-most-famous Austrian of all time

stories that caught our eye

Adios, Venezuela, Stage Left : It has always been a conceit on the Left that somehow, whatever bad things we do, we are still somehow the exclusive guardians of the flame of human progress. Whereas the Right, poor dears, are steeped in superstition and ignorance. But Left-wing Governments, at least extreme ones, can do just as much damage to the scientific culture of their country as any Right-wing theocracy, as this piece form Nature Briefings makes clear

Some researchers in Venezuela fear that science in the country is “going down the drain”. The country’s economy has been in crisis and national science funding is proportionally smaller than in comparable countries, leaving research institutions and universities struggling to stay open. Young scientists have left in droves seeking out high-quality education or stable career prospects. And an ‘anti-NGO’ law now requires non-governmental organizations to share information about their funding with the Venezuelan government. Researchers, who sometimes look to NGOs for support, worry that this gives the government discretion to prosecute anyone whose motives it does not agree with.Nature | 6 min read

Every Breath you take: We hear a lot about microplastics in water and food. Now it seems we are breathing them in from the very air itself. And what’s really scary is that the risks of this are quite, quite uncharted, a bit like tobacco in 1924. Here’s Michael Richardson and Meiru Wang for The Conversation:

https://theconversation.com/breathing-may-introduce-microplastics-to-the-brain-new-study-239347?utm_medium=email&utm_campaign=Latest%20from%20The%20C

Stem Cells give hope for diabetics About twenty or so years ago, we had the privilege of a few words with one of the greatest scientific entrepreneurs of this generation. And he told us that Stem Cells were going to be in the in thing for the future. Proof of this foresight comes in this second piece from Nature Briefings

A woman with type 1 diabetes started producing her own insulin less than three months after a transplant of reprogrammed stem cells. This case represents the first successful treatment for the disease using stem cells from the recipient’s own body, which could avoid the need for immunosuppressants. She was injected with the equivalent of 1.5 million stem-cell-derived islets in June 2023. While promising, the woman’s cells must continue to produce insulin for up to five years before considering her ‘cured’, cautions endocrinologist Jay Skyler.Nature | 6 min read
Reference: Cell paper

Allergies Rising? One of the few good things about the Covid-19 pandemic was the rise to prominence of Professor Devi Sridhar, that most clear-sighted of thinkers. So when she says: “allergies are really on the rise, this is not just a sampling error”, we sit up and take notice. So should you, via her article for The Guardian.

https://www.theguardian.com/commentisfree/2024/sep/30/food-allergies-children-england

Goodbye Coal and steel No one gloats at the loss of great workplaces and the terrible social changes their workers must now endure. And no one more than us, blissed-out children of the Enlightenment/Industrial Revolution can deny that coal and steel were really big steps forward in their day. But their comes a time both for individuals and societies when they really must move on, because it’s the future where reality lies. So Britain closes its last coal power station and blast furnaces. It is a brave step, and one day it will pay off.

https://www.bbc.co.uk/news/articles/ckgn4gg5y2yo

https://www.bbc.co.uk/news/articles/c8vdq6y56v0o

Mozart Rise and Fall of a genius few years ago we saw a rather nifty series called Rise of the Nazis. It was one of those drama documentaries where they mix a narrator over pictures of actors depicting real people, including such luminaries as Heinrich Himmler, Herman Goering and a certain Mr A. Hitler. It looks like the producers must have sat down and asked themselves; “Who’s the next most famous Austrian everyone’s heard of we can do?” No it wasn’t Arnold Schwarzenegger: instead they came up with this excellent series on Wolfgang Amadeus Mozart. We have always put him right up there in the top five or so musicians of All Time. So we loved it, and hope you will too Here’s a link which we hope works to the BBC i Player. Hasta la vista, baby!

https://www.bbc.co.uk/iplayer/episodes/m0021zdr/mozart-rise-of-a-genius#:~:text=Mozart:%20Rise%20of%20a%20Genius.%20Child%20prodigy,%20flawed

#allergies #microplastics #mozart #president maduro #venezuela #climate change #fossil fuels #stem cells #diabetes #medicine #health

Waves of hope, waves of despair-yes, it’s another round up of top stories!

We hope you like the headline, good job WH Auden never got there first! Now, to business: our round up this week is a mix of stories, some designed to comfort the afflicted (“HOPE”) and others designed to afflict the comfortable (“DESPAIR”) So, without further ado, let’s set off on our journey of discovery!

HOPE: Smart Insulin We have always sympathised with diabetes sufferers who must depend for life itself on regular injections. Imagine if these were replaced with a smart insulin molecule that “knew” to kick in exactly when it was needed! Well, that day may dawn quite soon:

https://www.dailymail.co.uk/news/article-13733337/Scientists-uncover-holy-grail-insulin-adapts-diabetics-changing-blood-sugar-levels-real-time-inject-week.html

DESPAIR: Antagonistic antibiotics We have always hymned the praises of antibiotics. But we are also a fair and balanced lot (we would be thrown out of the Whig Party if we weren’t) and we candidly admit that there may be circumstances in which the prescription of antibiotics can produce unwelcome effects.

https://www.dailymail.co.uk/health/article-13724201/antibiotics-rash-life-threatening-Britons.html

HOPE: Solar Power everywhere. Last year a prominent member of the Editorial Board had Solar panels installed. And remarkable they have proved. But every technology is only as good as the year it’s made in. What if you could develop a new type which you could coat onto everything-the car, your anorak, the garden wall? Scientists at Oxford University may have done just that:

https://www.ox.ac.uk/news/2024-08-09-solar-energy-breakthrough-could-reduce-need-solar-farms

^{thanks to P Seymour}

DESPAIR: Microbes Mutate in the Microwave We keep a pretty clean microwave round here-and rightly so. All those nasty little stains contain microbes-and it looks as if some of them can mutate to survive the radiation beams. If they can do it a microwave oven then, they can do it in the presence of antibiotics or bacteriophages too. Depressing.

https://www.dailymail.co.uk/sciencetech/article-13719161/germs-lurking-microwave-Radiation-resistant.html

HOPE Fusion Spin Offs before there is fusion One of our core beliefs is that learning generates learning. Discoveries in one area can have amazing spin offs in others. So, with a certain pride, we finish with this piece which suggests that all the herculean efforts to develop nuclear fusion technologies have not been in vain. We may not get the power until the late thirties-but there are already amazing benefits in everything from health to green energy. Next time some genius suggests cutting taxes, ask them if it will affect the University sector.

https://www.theguardian.com/science/article/2024/aug/11/nuclear-fusion-research-tae-power-solutions-cancer-propulsion?CMP=Share_iOSApp_Other

And finally: this thought from the late great Arthur C Clarke, who noted that there must be intelligent life elsewhere in the Universe: proof of this comes in the fact that they have never visited us on this planet.

#microorganisms #solar power #climate change #antibiotics #arthur c clarke